All proposed talks

   
Jens Zentgraf, Henning Timm and Sven Rahmann Cost-optimal assignment of elements in genome-scale multi-way bucketed Cuckoo hash tables
Jens Zentgraf and Sven Rahmann Faster Xenograft Sorting with 3-Way Bucketed Cuckoo Hashing of k-mers
Miika Leinonen and Leena Salmela Optical map guided genome assembly
Taiki Yamada, Kenichi Chiba, Nozomi Hasegawa, Keisuke Kataoka, Yuichi Shiraishi and Kana Shimizu Reference independent somatic structural variant call
Amatur Rahman, Paul Medvedev, Karel Brinda, Michael Baym and Gregory Kucherov
(Joined presentation by G. Kucherov and P. Medvedev)
Efficient and scalable representation of k-mer sets using simplitigs and spectrum-preserving string sets
Daniel Doerr Hierarchical Organization of Syntenic Blocks in Large Genomic Datasets
Borja Freire, Susana Ladra, José Ramón Paramá and Leena Salmela viaDBG - Fast and accurate approach for viralquasispecies inference
Riku Walve, Simon Puglisi and Leena Salmela Space-efficient indexing of spaced seeds for accurate overlap computation of raw optical mapping data
Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian and Ayumi Shinohara In-Place Bijective Burrows Wheeler Transformations
Paola Bonizzoni, Luca Denti, Erik Garrison, Yuri Pirola and Marco Previtali Dynamic quasi-minimal perfect hash function for k-mers
Antoine Limasset Million sequences indexing
Camille Marchet, Zamin Iqbal, Mikaël Salson and Rayan Chikhi REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets
Matthias Zytnicki srnaMapper: a mapping tool for short-RNA sequencing
Paola Bonizzoni, Tamara Ceccato, Gianluca Della Vedova, Luca Denti, Yuri Pirola, Marco Previtali and Raffaella Rizzi Shark: fishing in a sample to discard irrelevant RNA-Seq reads
Ehsan Haghshenas, Hossein Asghari, Jens Stoye, Cedric Chauve, Faraz Hach HASLR: Fast Hybrid Assembly of Long Reads
Tatiana Starikovskaya TBA
Bastien Cazaux TBA
[WIP] Téo Lemane, Paul Medvedev, Pierre Peterlongo HowDeSBT and Simka wedding. What has been done and what we plan to do.
[WIP] Antoine Limasset BCash: Best Compressible Hash