All proposed talks
| Jens Zentgraf, Henning Timm and Sven Rahmann | Cost-optimal assignment of elements in genome-scale multi-way bucketed Cuckoo hash tables |
| Jens Zentgraf and Sven Rahmann | Faster Xenograft Sorting with 3-Way Bucketed Cuckoo Hashing of k-mers |
| Miika Leinonen and Leena Salmela | Optical map guided genome assembly |
| Taiki Yamada, Kenichi Chiba, Nozomi Hasegawa, Keisuke Kataoka, Yuichi Shiraishi and Kana Shimizu | Reference independent somatic structural variant call |
| Amatur Rahman, Paul Medvedev, Karel Brinda, Michael Baym and Gregory Kucherov (Joined presentation by G. Kucherov and P. Medvedev) |
Efficient and scalable representation of k-mer sets using simplitigs and spectrum-preserving string sets |
| Daniel Doerr | Hierarchical Organization of Syntenic Blocks in Large Genomic Datasets |
| Borja Freire, Susana Ladra, José Ramón Paramá and Leena Salmela | viaDBG - Fast and accurate approach for viralquasispecies inference |
| Riku Walve, Simon Puglisi and Leena Salmela | Space-efficient indexing of spaced seeds for accurate overlap computation of raw optical mapping data |
| Dominik Köppl, Daiki Hashimoto, Diptarama Hendrian and Ayumi Shinohara | In-Place Bijective Burrows Wheeler Transformations |
| Paola Bonizzoni, Luca Denti, Erik Garrison, Yuri Pirola and Marco Previtali | Dynamic quasi-minimal perfect hash function for k-mers |
| Antoine Limasset | Million sequences indexing |
| Camille Marchet, Zamin Iqbal, Mikaël Salson and Rayan Chikhi | REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets |
| Matthias Zytnicki | srnaMapper: a mapping tool for short-RNA sequencing |
| Paola Bonizzoni, Tamara Ceccato, Gianluca Della Vedova, Luca Denti, Yuri Pirola, Marco Previtali and Raffaella Rizzi | Shark: fishing in a sample to discard irrelevant RNA-Seq reads |
| Ehsan Haghshenas, Hossein Asghari, Jens Stoye, Cedric Chauve, Faraz Hach | HASLR: Fast Hybrid Assembly of Long Reads |
| Tatiana Starikovskaya | TBA |
| Bastien Cazaux | TBA |
| [WIP] Téo Lemane, Paul Medvedev, Pierre Peterlongo | HowDeSBT and Simka wedding. What has been done and what we plan to do. |
| [WIP] Antoine Limasset | BCash: Best Compressible Hash |